A group of tools run on Windows for Bioinformatics. Include ported tools from Linux (e.g. BWA, SAMTOOLS), and later original Windows applications.
Project Fourtytwo released for preview. http://www.fourty-two.org
This is BOW's first original work. Together with tools already here you can have your own NGS pipeline on Windows Azure. It has been internally tested for a while on human
sequence data. We also did a demo of the running system at Microsoft eScience Workshop 2012 in Chicago. Check it out!
Tools can't live without.
Tabix - Generic indexer for TAB-delimited genome position files, is up for download. This is a response to a discussion here
Code on GitHub: https://github.com/xied75/tabix
samtools updated with bug fix, please download the new release.
BWA with multi-threading SAMPE is up for download, please make sure you read the release page:
BWA (Burrows-Wheeler Aligner) Multi-thread SAMPE
The code is up to GitHub: https://github.com/xied75/bwa/tree/mt-sampe
samtools updated with bug fix, please download and use this new release. Read the details on release page:
samtools (Tools for alignments in the SAM format)
Usage notes: New Line on Windows and Linux
samtools up for download, the source code is here:
Please make sure you read the release notes here:
Since Codeplex doesn't support GPLv3, now the BWA source code is up here:
Short survey: if you don't mind telling me your affiliation and a paragraph about why you plan to run these tools on Windows, or some suggestions to the next tool I should work on, either via Codeplex or Github, or email, I would be very thankful! :)
BWA is up for download, SAMTOOLS will be up very soon. Keep checking.