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bwa sampe not working


I am trying to run a bwa alignment on a windows machine. I am able to index and use aln command, but am not able to run bwa sampe. I even tried running without multithreading and still faced the same problem. No error message is generated. A window saying "bwa.exe has stopped working" appears and the program quits.
Closed Sep 9, 2013 at 9:18 PM by xied75
No response.


xied75 wrote May 25, 2013 at 8:02 PM


Which version are you running? The "Original" one or my multithreaded-MT one? Can you try the other if one is not working? Let me know your progress,



muthukumararjun wrote May 27, 2013 at 8:47 AM


I am trying to run your multithreaded version of bwa... What exactly do u mean by trying the other one?

xied75 wrote May 29, 2013 at 9:12 PM

I mean the 'normal' 'original' version which does not have MT in it. You can find it in the downloads.

Which version of Windows are you running on? How much memory you got? Is it 32 bit or 64 bit?



wrote Sep 9, 2013 at 9:18 PM